Loss of Zona Pellucida Binding Proteins in the Acrosomal Matrix Disrupts Acrosome Biogenesis and Sperm Morphogenesis | ScienceGate (2025)

Molecular and Cellular Biology

10.1128/mcb.01029-07

2007

Vol 27 (19)

pp. 6794-6805

Author(s):

Yi-Nan Lin

Angshumoy Roy

Wei Yan

Kathleen H. Burns

Martin M. Matzuk

Keyword(s):

Phylogenetic Analysis

Germ Cell

Zona Pellucida

In Silico

Sperm Morphology

Ultrastructural Studies

Acrosomal Membrane

Molecular Phylogenetic

ABSTRACT Zona pellucida binding protein 1 (ZPBP1), a spermatid and spermatozoon protein that localizes to the acrosome, was originally identified in pigs and named for its binding to the oocyte zona pellucida. In an in silico search for germ cell-specific genes, Zpbp1 and its novel paralog, Zpbp2, were discovered and confirmed to be expressed only in the testes in both mice and humans. To study the in vivo functions of both ZPBP proteins, we disrupted Zpbp1 and Zpbp2 in mice. Males lacking ZPBP1 were sterile, with abnormal round-headed sperm morphology and no forward sperm motility. Ultrastructural studies demonstrated that absence of ZPBP1 prevents proper acrosome compaction, resulting in acrosome fragmentation and disruption of the Sertoli-spermatid junctions. Males null for ZPBP2 were subfertile, demonstrated aberrant acrosomal membrane invaginations, and produced dysmorphic sperm with reduced ability to penetrate zona pellucida. Molecular phylogenetic analysis of ZPBPs from amphibians, birds, and mammals suggests that these paralogous genes coevolved to play cooperative roles during spermiogenesis. Whereas ZPBP1 was discovered for an in vitro role in sperm-egg interactions, we have shown that both ZPBP proteins play an earlier structural role during spermiogenesis.

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Probing the ultrastructure of the mitotic and meiotic spindle in eggs: An expeditious approach based on semi-thin (0.25 μm) serial sections

Proceedings, annual meeting, Electron Microscopy Society of America

10.1017/s0424820100076408

1983

Vol 41

pp. 552-555

Author(s):

Conly L. Rieder

S. Bowser

R. Nowogrodzki

K. Ross

G. Sluder

Keyword(s):

Small Sample Size

Small Sample

Meiotic Spindle

Serial Sections

Mitotic Apparatus

Thin Sections

Cell Cycles

Ultrastructural Studies

Eggs have long been a favorite material for studying the mechanism of karyokinesis in-vivo and in-vitro. They can be obtained in great numbers and, when fertilized, divide synchronously over many cell cycles. However, they are not considered to be a practical system for ultrastructural studies on the mitotic apparatus (MA) for several reasons, the most obvious of which is that sectioning them is a formidable task: over 1000 ultra-thin sections need to be cut from a single 80-100 μm diameter egg and of these sections only a small percentage will contain the area or structure of interest. Thus it is difficult and time consuming to obtain reliable ultrastructural data concerning the MA of eggs; and when it is obtained it is necessarily based on a small sample size.We have recently developed a procedure which will facilitate many studies concerned with the ultrastructure of the MA in eggs. It is based on the availability of biological HVEM's and on the observation that 0.25 μm thick serial sections can be screened at high resolution for content (after mounting on slot grids and staining with uranyl and lead) by phase contrast light microscopy (LM; Figs 1-2).

Recent In Vitro and In Silico Advances in the Understanding of Intranasal Drug Delivery

Current Pharmaceutical Design

10.2174/1381612826666201112143230

2020

Vol 26

Author(s):

John Chen

Andrew Martin

Warren H. Finlay

Keyword(s):

Drug Delivery

In Silico

Local Drug Delivery

In Vivo Studies

Intranasal Drug Delivery

Nasal Sprays

In Silico Studies

Drug Delivery Devices

Background: Many drugs are delivered intranasally for local or systemic effect, typically in the form ofdroplets or aerosols. Because of the high cost of in vivo studies, drug developers and researchers often turn to in vitro or insilico testing when first evaluating the behavior and properties of intranasal drug delivery devices and formulations.Recent advances in manufacturing and computer technologies have allowed for increasingly realistic and sophisticated invitro and in silico reconstructions of the human nasal airways.Objective:To perform a summary of advances in understanding of intranasal drug delivery based on recent in vitro and insilico studies.Conclusion: The turbinates are a common target for local drug delivery applications, and while nasal sprays are able toreach this region, there is currently no broad consensus across the in vitro and in silico literature concerning optimalparameters for device design, formulation properties and patient technique which would maximize turbinate deposition.Nebulizers are able to more easily target the turbinates, but come with the disadvantage of significant lung deposition.Targeting of the olfactory region of the nasal cavity has been explored for potential treatment of central nervous systemconditions. Conventional intranasal devices, such as nasal sprays and nebulizers, deliver very little dose to the olfactoryregion. Recent progress in our understanding of intranasal delivery will be useful in the development of the nextgeneration of intranasal drug delivery devices.

In-silico Studies of Isolated Phytoalkaloid Against Lipoxygenase: Study Based on Possible Correlation

10.2174/1386207321666180220125406

2018

Vol 21 (3)

pp. 215-221

Author(s):

Haroon Khan

Muhammad Zafar

Helena Den-Haan

Horacio Perez-Sanchez

Mohammad Amjad Kamal

Keyword(s):

In Silico

Docking Studies

In Vivo Studies

In Vitro Assays

Chronic Obstructive

Lipoxygenase Inhibitors

Lipoxygenase Inhibition

In Silico Studies

Aim and Objective: Lipoxygenase (LOX) enzymes play an important role in thepathophysiology of several inflammatory and allergic diseases including bronchial asthma, allergicrhinitis, atopic dermatitis, allergic conjunctivitis, rheumatoid arthritis and chronic obstructivepulmonary disease. Inhibitors of the LOX are believed to be an ideal approach in the treatment ofdiseases caused by its over-expression. In this regard, several synthetic and natural agents are underinvestigation worldwide. Alkaloids are the most thoroughly investigated class of natural compoundswith outstanding past in clinically useful drugs. In this article, we have discussed various alkaloids ofplant origin that have already shown lipoxygenase inhibition in-vitro with possible correlation in insilico studies.Materials and Methods: Molecular docking studies were performed using MOE (MolecularOperating Environment) software. Among the ten reported LOX alkaloids inhibitors, derived fromplant, compounds 4, 2, 3 and 1 showed excellent docking scores and receptor sensitivity.Result and Conclusion: These compounds already exhibited in vitro lipoxygenase inhibition and theMOE results strongly correlated with the experimental results. On the basis of these in vitro assaysand computer aided results, we suggest that these compounds need further detail in vivo studies andclinical trial for the discovery of new more effective and safe lipoxygenase inhibitors. In conclusion,these results might be useful in the design of new and potential lipoxygenase (LOX) inhibitors.

Assessing Drug Transport Across the Human Placental Barrier: From In Vivo and In Vitro Measurements to the Ex Vivo Perfusion Method and In silico Techniques

Current Pharmaceutical Biotechnology

10.2174/138920111795470930

2011

Vol 12 (5)

pp. 804-813

Author(s):

Constantinos Giaginis

Anna Tsantili-Kakoulidou

Stamatios Theocharis

Keyword(s):

In Silico

Drug Transport

Ex Vivo

Placental Barrier

Ex Vivo Perfusion

Perfusion Method

In Vitro Measurements

In Silico Assessment of ADME Properties: Advances in Caco-2 Cell Monolayer Permeability Modeling

Current Topics in Medicinal Chemistry

10.2174/1568026619666181130140350

2019

Vol 18 (26)

pp. 2209-2229

Author(s):

Hai Pham-The

Miguel Á. Cabrera-Pérez

Nguyen-Hai Nam

Juan A. Castillo-Garit

Bakhtiyor Rasulev

...

Keyword(s):

Intestinal Absorption

In Silico

Review Paper

Cell Monolayer

Cell Permeability

Drug Substances

Wide Range

Modeling Techniques

One of the main goals of in silico Caco-2 cell permeability models is to identify those drugsubstances with high intestinal absorption in human (HIA). For more than a decade, several in silicoCaco-2 models have been made, applying a wide range of modeling techniques; nevertheless, their capacityfor intestinal absorption extrapolation is still doubtful. There are three main problems related tothe modest capacity of obtained models, including the existence of inter- and/or intra-laboratory variabilityof recollected data, the influence of the metabolism mechanism, and the inconsistent in vitro-invivo correlation (IVIVC) of Caco-2 cell permeability. This review paper intends to sum up the recentadvances and limitations of current modeling approaches, and revealed some possible solutions to improvethe applicability of in silico Caco-2 permeability models for absorption property profiling, takinginto account the above-mentioned issues.

In Silico Study of Potential Cross-Kingdom Plant MicroRNA Based Regulation in Chronic Myeloid Leukemia

Current Pharmacogenomics and Personalized Medicine

10.2174/1875692118666200106113610

2020

Vol 17 (2)

pp. 125-132

Author(s):

Marjanu Hikmah Elias

Noraziah Nordin

Nazefah Abdul Hamid

Keyword(s):

Targeted Therapy

In Silico

Structure Prediction

Tertiary Structure

Target Prediction

In Silico Analysis

Microrna Target

Good Target

Background:Chronic Myeloid Leukaemia (CML) is associated with the BCRABL1gene, which plays a central role in the pathogenesis of CML. Thus, it is crucial tosuppress the expression of BCR-ABL1 in the treatment of CML. MicroRNA is known tobe a gene expression regulator and is thus a good candidate for molecularly targeted therapyfor CML.Objective: This study aims to identify the microRNAs from edible plants targeting the 3’Untranslated Region (3’UTR) of BCR-ABL1.Methods:In this in silico analysis, the sequence of 3’UTR of BCR-ABL1 was obtainedfrom Ensembl Genome Browser. PsRNATarget Analysis Server and MicroRNA TargetPrediction (miRTar) Server were used to identify miRNAs that have binding conformitywith 3’UTR of BCR-ABL1. The MiRBase database was used to validate the species ofplants expressing the miRNAs. The RNAfold web server and RNA COMPOSER wereused for secondary and tertiary structure prediction, respectively.Results:In silico analyses revealed that cpa-miR8154, csi-miR3952, gma-miR4414-5p,mdm-miR482c, osa-miR1858a and osa-miR1858b show binding conformity with strongmolecular interaction towards 3’UTR region of BCR-ABL1. However, only cpa-miR-8154, osa-miR-1858a and osa-miR-1858b showed good target site accessibility.Conclusion:It is predicted that these microRNAs post-transcriptionally inhibit the BCRABL1gene and thus could be a potential molecular targeted therapy for CML. However,further studies involving in vitro, in vivo and functional analyses need to be carried out todetermine the ability of these miRNAs to form the basis for targeted therapy for CML.

In Silico Predicted Antifungal Peptides: In Vitro and In Vivo Anti-Candida Activity

Journal of Fungi

10.3390/jof7060439

2021

Vol 7 (6)

pp. 439

Author(s):

Tecla Ciociola

Walter Magliani

Tiziano De Simone

Thelma A. Pertinhez

Stefania Conti

...

Keyword(s):

In Silico

Mammalian Cells

Galleria Mellonella

Ex Vivo

Consensus Sequence

In Silico Analysis

Significant Activity

Synthetic Antibody

It has been previously demonstrated that synthetic antibody-derived peptides could exert a significant activity in vitro, ex vivo, and/or in vivo against microorganisms and viruses, as well as immunomodulatory effects through the activation of immune cells. Based on the sequence of previously described antibody-derived peptides with recognized antifungal activity, an in silico analysis was conducted to identify novel antifungal candidates. The present study analyzed the candidacidal and structural properties of in silico designed peptides (ISDPs) derived by amino acid substitutions of the parent peptide KKVTMTCSAS. ISDPs proved to be more active in vitro than the parent peptide and all proved to be therapeutic in Galleria mellonella candidal infection, without showing toxic effects on mammalian cells. ISDPs were studied by circular dichroism spectroscopy, demonstrating different structural organization. These results allowed to validate a consensus sequence for the parent peptide KKVTMTCSAS that may be useful in the development of novel antimicrobial molecules.

European Journal of Pharmaceutical Sciences

10.1016/j.ejps.2021.105840

2021

pp. 105840

Author(s):

Laura J. Henze

Niklas J. Koehl

Joseph P. O'Shea

René Holm

Maria Vertzoni

...

Keyword(s):

In Silico

Food Effect

Preclinical Stage

Species Specific

In Silico Models

Synthesis and characterization of Chitosan-Catechol conjugates: Development and in vitro, in silico and in vivo evaluation of mucoadhesive pellets of lafutidine

Journal of Bioactive and Compatible Polymers

10.1177/0883911521997849

2021

pp. 088391152199784

Author(s):

Loveleen Kaur

Ajay Kumar Thakur

Pradeep Kumar

Inderbir Singh

Keyword(s):

Drug Release

In Silico

Ex Vivo

Strong Interactions

Dissolution Time

Sem Images

In Vivo Evaluation

Release Studies

Present study was aimed to synthesize and characterize Chitosan-Catechol conjugates and to design and develop mucoadhesive pellets loaded with lafutidine. SEM images indicated the presence of fibrous structures responsible for enhanced mucoadhesive potential of Chitosan-Catechol conjugates. Thermodynamic stability and amorphous nature of conjugates was confirmed by DSC and XRD studies respectively. Rheological studies were used to evaluate polymer mucin interactions wherein strong interactions between Chitosan-Catechol conjugate and mucin was observed in comparison to pristine chitosan and mucin. The mucoadhesion potential of Chitosan-Catechol (Cht-C) versus Chitosan (Cht) was assessed in silico using molecular mechanics simulations and the results obtained were compared with the in vitro and ex vivo results. Cht-C/mucin demonstrated much higher energy stabilization (∆E ≈ −65 kcal/mol) as compared to Cht/mucin molecular complex. Lafutidine-loaded pellets were prepared from Chitosan (LPC) and Chitosan-Catechol conjugates (LPCC) and were evaluated for various physical properties viz. flow, circularity, roundness, friability, drug content, particle size and percent mucoadhesion. In vitro drug release studies on LPC and LPCC pellets were performed for computing t50%, t90% and mean dissolution time. The values of release exponent from Korsmeyer-Peppas model was reported to be 0.443 and 0.759 for LPC and LPCC pellets suggesting Fickian and non-Fickian mechanism representing drug release, respectively. In vivo results depicted significant controlled release and enhanced residence of the drug after being released from the chitosan-catechol coated pellets. Chitosan-Catechol conjugates were found to be a promising biooadhesive polymer for the development of various mucoadhesive formulations.

Potential of nafimidone derivatives against co‐morbidities of epilepsy: In vitro, in vivo, and in silico investigations

Drug Development Research

10.1002/ddr.21858

2021

Author(s):

Suat Sari

Burak Barut

Monika Marcinkowska

Suna Sabuncuoğlu

Ahmet Avci

...

Keyword(s):

In Silico

Loss of Zona Pellucida Binding Proteins in the Acrosomal Matrix Disrupts Acrosome Biogenesis and Sperm Morphogenesis | ScienceGate (2025)
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